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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP311717.1 nt Synthetic construct MCAP PBV3, comp... 11376 bp synthetic construct QL-CON-00-014 163 bp View
OP311718.1 nt Synthetic construct MCAP PBV4, comp... 11376 bp synthetic construct QL-CON-00-014 163 bp View
OP311719.1 nt Synthetic construct MCAP PBV5, comp... 11376 bp synthetic construct QL-CON-00-014 163 bp View
OP311720.1 nt Synthetic construct MCAP PBV6, comp... 11376 bp synthetic construct QL-CON-00-014 163 bp View
OP672267.1 nt Vector pK2GW7-Ec86RT, complete sequ... 10644 bp Vector pK2GW7-Ec86RT QL-CON-00-014 140 bp View
OP672268.1 nt Vector pK2-Cas9-XTEN-RT, complete s... 14802 bp Vector pK2-Cas9-XTEN-RT QL-CON-00-014 140 bp View
OP672269.1 nt Vector pK2-Cas9-T2A-RT, complete se... 14808 bp Vector pK2-Cas9-T2A-RT QL-CON-00-014 140 bp View
OP672270.1 nt Vector pK2-RT-XTEN-Cas9, complete s... 14802 bp Vector pK2-RT-XTEN-Cas9 QL-CON-00-014 140 bp View
OP672271.1 nt Vector PK2-Cas9, complete sequence. 13797 bp Vector PK2-Cas9 QL-CON-00-014 140 bp View
OQ732917.1 nt Binary vector pGK21.0402, complete ... 17142 bp Binary vector pGK21.0402 QL-CON-00-014 163 bp View
OQ732918.1 nt Binary vector pGK19.0923, complete ... 17064 bp Binary vector pGK19.0923 QL-CON-00-014 163 bp View
OR392453.1 nt Vector pMON521-ToMoV{A}1.5mer, comp... 14747 bp Vector pMON521-ToMoV{A}1.5mer QL-CON-00-014 164 bp View
OR392454.1 nt Vector pMON521-ToMoV{B}1.5mer, comp... 16123 bp Vector pMON521-ToMoV{B}1.5mer QL-CON-00-014 164 bp View
OR636129.1 nt Vector pEAQHT/35s:p19:xGluchy:mCher... 10698 bp Vector pEAQHT/35s:p19:xGluchy:mCherry:NosT QL-CON-00-014 163 bp View
OR842973.1 nt Expression vector mTALEAD16SrRNA1, ... 17253 bp Expression vector mTALEAD16SrRNA1 QL-CON-00-014 140 bp View
OR842974.1 nt Expression vector mTALEAD16SrRNA2, ... 16743 bp Expression vector mTALEAD16SrRNA2 QL-CON-00-014 140 bp View
OR842975.1 nt Expression vector mTALEAD16SrRNA113... 16845 bp Expression vector mTALEAD16SrRNA1131T8C QL-CON-00-014 140 bp View
OR842976.1 nt Expression vector mTALEAD16SrRNA113... 16641 bp Expression vector mTALEAD16SrRNA1131T10C QL-CON-00-014 140 bp View
OR842978.1 nt Expression vector mTALEAD16SrRNA113... 17151 bp Expression vector mTALEAD16SrRNA1139T10C QL-CON-00-014 140 bp View
OR842979.1 nt Expression vector mTALEADATP621, co... 17239 bp Expression vector mTALEADATP621 QL-CON-00-014 140 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.