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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 206 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MO361551.1 emblrelpat Sequence 5 from patent US 10407688. 11978 bp unidentified QL-CON-00-011 102 bp View
MO361552.1 emblrelpat Sequence 6 from patent US 10407688. 16752 bp unidentified QL-CON-00-011 102 bp View
MS901023.1 emblrelpat Sequence 33 from Patent EP3156489. 11205 bp synthetic construct QL-CON-00-011 104 bp View
MS901026.1 emblrelpat Sequence 36 from Patent EP3156489. 11205 bp synthetic construct QL-CON-00-011 104 bp View
MV348901.1 emblrelpat Sequence 1 from patent US 10689664. 8295 bp unidentified QL-CON-00-011 104 bp View
MV348902.1 emblrelpat Sequence 2 from patent US 10689664. 13821 bp unidentified QL-CON-00-011 104 bp View
MX926865.1 emblrelpat Sequence 9 from patent US 11053514. 7914 bp unidentified QL-CON-00-011 104 bp View
MX926865.1 emblrelpat Sequence 9 from patent US 11053514. 7914 bp unidentified QL-CON-00-011 104 bp View
MX926866.1 emblrelpat Sequence 10 from patent US 11053514. 9206 bp unidentified QL-CON-00-011 104 bp View
MX926866.1 emblrelpat Sequence 10 from patent US 11053514. 9206 bp unidentified QL-CON-00-011 104 bp View
MX927507.1 emblrelpat Sequence 23 from patent US 11053544. 11922 bp unidentified QL-CON-00-011 102 bp View
MX927508.1 emblrelpat Sequence 24 from patent US 11053544. 7390 bp unidentified QL-CON-00-011 102 bp View
MX927511.1 emblrelpat Sequence 27 from patent US 11053544. 2830 bp unidentified QL-CON-00-011 102 bp View
NRN_A95052 nrnl1 Sequence 9 from Patent WO9929880. ... 4186 bp unidentified QL-CON-00-011 98 bp View
NRN_AX195438 nrnl1 Sequence 1 from Patent WO0151654. ... 3983 bp unidentified QL-CON-00-011 111 bp View
NRN_BD014476 nrnl1 Transgenic corn and method of detec... 601 bp unidentified QL-CON-00-011 111 bp View
NRN_BD014493 nrnl1 Transgenic corn and method of detec... 820 bp unidentified QL-CON-00-011 111 bp View
NRN_CQ924483 nrnl1 Sequence 10 from Patent EP1477557. ... 13737 bp unidentified QL-CON-00-011 111 bp View
NRN_CQ945862 nrnl1 Sequence 24 from Patent WO200409944... 11361 bp unidentified QL-CON-00-011 102 bp View
NRN_CQ945863 nrnl1 Sequence 25 from Patent WO200409944... 6186 bp unidentified QL-CON-00-011 102 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.