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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 236 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MV639803.1 emblrelpat Sequence 67779 from patent US 10760091. 12554 bp unidentified QL-CON-00-008 88 bp View
MV668282.1 emblrelpat Sequence 83 from patent US 10767191. 3706 bp unidentified QL-CON-00-008 88 bp View
MV670661.1 emblrelpat Sequence 1 from patent US 10772276. 8590 bp unidentified QL-CON-00-008 88 bp View
MV670662.1 emblrelpat Sequence 2 from patent US 10772276. 7794 bp unidentified QL-CON-00-008 88 bp View
MX357354.1 emblrelpat Sequence 103 from patent US 10913939. 1596 bp unidentified QL-CON-00-008 88 bp View
NRN_A59871 nrnl1 Sequence 3 from Patent WO9706269. 1667 bp unidentified QL-CON-00-008 88 bp View
NRN_AR143709 nrnl1 Sequence 1 from patent US 6204436. ... 8012 bp unidentified QL-CON-00-008 88 bp View
NRN_AR143712 nrnl1 Sequence 4 from patent US 6204436. ... 8798 bp unidentified QL-CON-00-008 88 bp View
NRN_AR143713 nrnl1 Sequence 5 from patent US 6204436. ... 8418 bp unidentified QL-CON-00-008 88 bp View
NRN_AR225313 nrnl1 Sequence 5 from patent US 6441277. ... 10846 bp unidentified QL-CON-00-008 88 bp View
NRN_AR225314 nrnl1 Sequence 6 from patent US 6441277. ... 10900 bp unidentified QL-CON-00-008 88 bp View
NRN_BD062173 nrnl1 Expression of fructose 1,6 bisphosp... 10847 bp unidentified QL-CON-00-008 88 bp View
NRN_BD062174 nrnl1 Expression of fructose 1,6 bisphosp... 10901 bp unidentified QL-CON-00-008 88 bp View
NRN_CQ867566 nrnl1 Sequence 5 from Patent WO2004074492... 3778 bp unidentified QL-CON-00-008 88 bp View
NRN_CQ867567 nrnl1 Sequence 6 from Patent WO2004074492... 3706 bp unidentified QL-CON-00-008 88 bp View
NRN_CS421030 nrnl1 Sequence 1 from Patent WO2006099249... 8590 bp unidentified QL-CON-00-008 88 bp View
NRN_CS421031 nrnl1 Sequence 2 from Patent WO2006099249... 7794 bp unidentified QL-CON-00-008 88 bp View
NRN_DJ058152 nrnl1 Corn Plant MON88017 and Composition... 7450 bp unidentified QL-CON-00-008 88 bp View
NRN_FB572992 nrnl1 Sequence 9 from Patent WO2006130436... 6466 bp unidentified QL-CON-00-008 88 bp View
NRN_FW310534 nrnl1 PRODUCTION OF HIGH TRYPTOPHAN MAIZE... 13596 bp unidentified QL-CON-00-008 88 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.