Match details
| Record ID: | A60109.1 | |
|---|---|---|
| Database: | emblrelpat | Go to original record |
| Description: | Sequence 2 from Patent WO9706267. | |
| Taxon: | Plasmid PTS172 | |
| Original size: | 6548 bp | |
| Patents: | WO9706267 (lens, espacenet) | |
View other 15 matches for this record
| Method: | QL-ELE-00-001 | Go to GMOMETHODS record |
|---|---|---|
| View in JRC GMO-Matrix | ||
| Description: | Qualitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter (BVL L 00.00-31, 1998). | |
| Target: | CaMV P-35S | |
View other 10093 matches for this method
Predicted amplification details:
| Mismatches | Gaps | From | To | Strand | Amplicon size |
|---|---|---|---|---|---|
| 0 | 0 | 5413 | 5607 | + | 195 bp |
| Amplicon: | 195 bp |
|---|
1 GCTCCTACAA ATGCCATCAT TGCGATAAAG GAAAGGCTAT CATTCAAGAT 51 GCCTCTGCCG ACAGTGGTCC CAAAGATGGA CCCCCACCCA CGAGGAGCAT 101 CGTGGAAAAA GAAGACGTTC CAACCACGTC TTCAAAGCAA GTGGATTGAT 151 GTGACATCTC CACTGACGTA AGGGATGACG CACAATCCCA CTATC
View other 4005 matches with an identical amplicon
Primers alignment:
| Primer/Probe | % Identity | Length | Mismatches | Gaps | From | To | Score |
|---|---|---|---|---|---|---|---|
| primerA | 100.0 | 19 bp | 0 | 0 | 5413 | 5431 | 2.35e-07 |
| primerB | 100.0 | 20 bp | 0 | 0 | 5607 | 5588 | 6.48e-08 |
Related publications:
- Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
- Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.