Match details
| Record ID: | A59870.1 | |
|---|---|---|
| Database: | emblrelpat | Go to original record |
| Description: | Sequence 2 from Patent WO9706269. | |
| Taxon: | unidentified | |
| Original size: | 1138 bp | |
| Patents: | WO9706269 (lens, espacenet) | |
View other 14 matches for this record
| Method: | QL-ELE-00-001 | Go to GMOMETHODS record |
|---|---|---|
| View in JRC GMO-Matrix | ||
| Description: | Qualitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter (BVL L 00.00-31, 1998). | |
| Target: | CaMV P-35S | |
View other 10093 matches for this method
Predicted amplification details:
| Mismatches | Gaps | From | To | Strand | Amplicon size |
|---|---|---|---|---|---|
| 0 | 0 | 522 | 717 | + | 196 bp |
| Amplicon: | 196 bp |
|---|
1 GCTCCTACAA ATGCCATCAT TGCGATAAAG GAAAGGCCAT CGTTGAAGAT 51 GCCTCTGCCG ACAGTGGTCC CAAAGATGGA CCCCCACCCA CGAGGAGCAT 101 CGTGGAAAAA AGAAGACGTT CCAACCACGT CTTCAAAGCA AGTGGATTGA 151 TGTGATATCT CCACTGACGT AAGGGATGAC GCACAATCCC ACTATC
View other 7 matches with an identical amplicon
Primers and probe alignment:
| Primer/Probe | % Identity | Length | Mismatches | Gaps | From | To | Score |
|---|---|---|---|---|---|---|---|
| primerA | 100.0 | 19 bp | 0 | 0 | 194 | 212 | 4.43e-08 |
| primerA | 100.0 | 19 bp | 0 | 0 | 522 | 540 | 4.43e-08 |
| primerB | 100.0 | 20 bp | 0 | 0 | 717 | 698 | 1.21e-08 |
Related publications:
- Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
- Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.