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Match details


QL-ELE-00-001 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter (L 00.00-31, 1998). Targets:CaMV P-35S<--->CaMV P-35S
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Database:nt Go to original record
Description:Gossypium hirsutum transgenic clone LLcotton25 phosphinothricin N-acetyltransferase gene, complete cds.
Taxon:Gossypium hirsutum
Original size:4644 bp
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Predicted amplification details:

Mismatches Gaps From To Strand Amplicon size
0 0 2839 3033 + 195


1     gctcctacaa atgccatcat tgcgataaag gaaaggctat cattcaagat
51    ccctctgccg acagtggtcc caaagatgga cccccaccca cgaggagcat
101   cgtggaaaaa gaagacgttc caaccacgtc ttcaaagcaa gtggattgat
151   gtgacatctc cactgacgta agggatgacg cacaatccca ctatc 
View other 3 matches with an identical amplicon

Primers alignment:

Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.000 19 0 0 1 19 3.10e-08
primerB 100.000 20 0 0 195 176 9.28e-09

For more information, see:
"JRC GMO-Amplicons: a collection of nucleic acid sequences related to genetically modified organisms." Database (Oxford). 2015 Sep 30;2015. link

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