Navigation path

Additional tools

  • Print version
  • Decrease text
  • Increase text

Match details

Method:

QL-ELE-00-011 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of nopaline synthase terminator (Reiting et al., 2007). Targets:T-nos<--->T-nos
View other 14610 matches for this method


Target:

HQ233646.1
Database:nt Go to original record
Description:Gossypium hirsutum transgenic clone LLcotton25 phosphinothricin N-acetyltransferase gene, complete cds.
Taxon:Gossypium hirsutum
Original size:4644 bp
Patents:
View other 15 matches for this record


Predicted amplification details:

Mismatches Gaps From To Strand Amplicon size
0 0 3825 3908 + 84


Amplicon:

84bp
1     catgtaatgc atgacgttat ttatgagatg ggtttttatg attagagtcc
51    cgcaattata catttaatac gcgatagaaa acaa 
View other 28893 matches with an identical amplicon


Primers and probe alignment:

Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.000 25 0 0 1 25 9.20e-12
primerB 100.000 25 0 0 84 60 9.20e-12
probe 100.000 28 0 0 28 55 2.28e-13

For more information, see:
"JRC GMO-Amplicons: a collection of nucleic acid sequences related to genetically modified organisms." Database (Oxford). 2015 Sep 30;2015. link


NEW! Download a How-To guide: "Using the EURL GMFF online bioinformatics resources"


© European Union, 2015

The information above is provided "as is" without warranty of any kind, either express or implied, including, but not limited to, fitness for a particular purpose and absence of errors in the application. The entire risk as to the use, quality, and performance of the application is with the user. The EU will not be liable for any incidental, consequential, direct or indirect damages including but not limited to the loss of data, loss of profits, or any other financial loss arising from the use or inability to use the application.