Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 7 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AR606321.1 emblrelpat Sequence 1 from patent US 6818807. 850 bp unidentified QT-EVE-GH-002 78 bp View
AX705314.1 emblrelpat Sequence 1 from Patent WO03013224. 850 bp synthetic construct QT-EVE-GH-002 78 bp View
GC663121.1 emblrelpat Sequence 1 from patent US 7442504. 850 bp unidentified QT-EVE-GH-002 78 bp View
GX731208.1 emblrelpat Sequence 1 from patent US 7834168. 850 bp unidentified QT-EVE-GH-002 78 bp View
HQ233646.1 nt Gossypium hirsutum transgenic clone... 4644 bp Gossypium hirsutum QT-EVE-GH-002 79 bp View
HQ233646.1 emblreltgn Gossypium hirsutum transgenic clone... 4644 bp Gossypium hirsutum QT-EVE-GH-002 79 bp View
NRN_AX705314 nrnl1 Sequence 1 from Patent WO03013224. ... 850 bp unidentified QT-EVE-GH-002 78 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.