JRC GMO-Amplicons | EURL GMFF

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown

Event-specific

Construct-specific

Element-specific

Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

GenBank nt section (NCBI)

emblreltgn

ENA transgenic data class division (EMBL-EBI)

emblrelpat

ENA patent data class division (EMBL-EBI)

nrnl1

Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:

Mismatches:

* required field

Results : 15373 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)

Amplicons found in the selected databases
Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
A18052.1	emblrelpat	chimaeric gene (coding sequence of ...	1287 bp	synthetic construct	QL-ELE-00-006	180 bp	View
A18053.1	emblrelpat	DNA for transforming monocotyledono...	4883 bp	synthetic construct	QL-ELE-00-006	180 bp	View
A23334.1	emblrelpat	PVE108 plasmid DNA	5620 bp	Escherichia coli	QL-ELE-00-006	180 bp	View
A23334.1	emblrelpat	PVE108 plasmid DNA	5620 bp	Escherichia coli	QL-ELE-00-006	180 bp	View
A23633.1	emblrelpat	Plasmid pVE149	6376 bp	unidentified	QL-ELE-00-006	180 bp	View
A23633.1	emblrelpat	Plasmid pVE149	6376 bp	unidentified	QL-ELE-00-006	180 bp	View
A23998.1	emblrelpat	pTE4 expression vector	7049 bp	synthetic construct	QL-ELE-00-006	180 bp	View
A26453.1	emblrelpat	Recombinant soya beta-1,3-glucanase...	1829 bp	Glycine max	QL-ELE-00-006	180 bp	View
A32909.1	emblrelpat	Chimeric endochitinase gene	1863 bp	Nicotiana tabacum	QL-ELE-00-006	180 bp	View
A40106.1	emblrelpat	Sequence 14 from Patent WO9421793.	4284 bp	unidentified	QL-ELE-00-006	180 bp	View
A40108.1	emblrelpat	Sequence 16 from Patent WO9421793.	1863 bp	unidentified	QL-ELE-00-006	180 bp	View
A59870.1	emblrelpat	Sequence 2 from Patent WO9706269.	1138 bp	unidentified	QL-ELE-00-006	180 bp	View
A60108.1	emblrelpat	Sequence 1 from Patent WO9706267.	4946 bp	Transformation vector pTHW107	QL-ELE-00-006	180 bp	View
A60109.1	emblrelpat	Sequence 2 from Patent WO9706267.	6548 bp	Plasmid PTS172	QL-ELE-00-006	180 bp	View
A60111.1	emblrelpat	Sequence 4 from Patent WO9706267.	6291 bp	Transformation vector pVE136	QL-ELE-00-006	180 bp	View
A60111.1	emblrelpat	Sequence 4 from Patent WO9706267.	6291 bp	Transformation vector pVE136	QL-ELE-00-006	180 bp	View
A71435.1	emblrelpat	Sequence 5 from Patent WO9810081.	4032 bp	unidentified	QL-ELE-00-006	180 bp	View
A71436.1	emblrelpat	Sequence 6 from Patent WO9810081.	563 bp	unidentified	QL-ELE-00-006	180 bp	View
A71440.1	emblrelpat	Sequence 10 from Patent WO9810081.	5611 bp	unidentified	QL-ELE-00-006	180 bp	View
A75886.1	emblrelpat	Sequence 1 from Patent WO9321335.	4883 bp	unidentified	QL-ELE-00-006	180 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.