JRC GMO-Amplicons | EURL GMFF

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown

Event-specific

Construct-specific

Element-specific

Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

GenBank nt section (NCBI)

emblreltgn

ENA transgenic data class division (EMBL-EBI)

emblrelpat

ENA patent data class division (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:

Mismatches:

* required field

Results : 7479 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)

Amplicons found in the selected databases
Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
OQ415176.1	nt	Synthetic construct clone L1P60, co...	7322 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415176.1	nt	Synthetic construct clone L1P60, co...	7322 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415177.1	nt	Synthetic construct clone L1P63, co...	11124 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415177.1	nt	Synthetic construct clone L1P63, co...	11124 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415178.1	nt	Synthetic construct clone L1P78, co...	8080 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415179.1	nt	Synthetic construct clone L1P79, co...	6833 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415180.1	nt	Synthetic construct clone L1P80, co...	7028 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415181.1	nt	Synthetic construct clone L1P96, co...	8134 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415182.1	nt	Synthetic construct clone L1P126, c...	12099 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415183.1	nt	Synthetic construct clone L1Tp4, co...	8068 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415183.1	nt	Synthetic construct clone L1Tp4, co...	8068 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415184.1	nt	Synthetic construct clone L1Tp5, co...	8092 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415184.1	nt	Synthetic construct clone L1Tp5, co...	8092 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415185.1	nt	Synthetic construct clone L1Tp6, co...	8086 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415185.1	nt	Synthetic construct clone L1Tp6, co...	8086 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ415186.1	nt	Synthetic construct clone L1Tp8, co...	8688 bp	synthetic construct	QL-ELE-00-001	195 bp	View
OQ601558.1	nt	Vector pTLAB21_Bs314EBE_avrGf2, com...	14436 bp	Vector pTLAB21_Bs314EBE_avrGf2	QL-ELE-00-001	195 bp	View
OR636129.1	nt	Vector pEAQHT/35s:p19:xGluchy:mCher...	10698 bp	Vector pEAQHT/35s:p19:xGluchy:mCherry:NosT	QL-ELE-00-001	195 bp	View
OR636129.1	nt	Vector pEAQHT/35s:p19:xGluchy:mCher...	10698 bp	Vector pEAQHT/35s:p19:xGluchy:mCherry:NosT	QL-ELE-00-001	195 bp	View
OR672127.1	nt	Cloning vector pTPH-NmYG, complete ...	11617 bp	Cloning vector pTPH-NmYG	QL-ELE-00-001	195 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.