Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 72 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GY184365.1 emblrelpat Sequence 21 from patent US 7932033. 3594 bp unidentified QT-EVE-ZM-012 86 bp View
GY184367.1 emblrelpat Sequence 23 from patent US 7932033. 11922 bp unidentified QT-EVE-ZM-012 86 bp View
GY184376.1 emblrelpat Sequence 32 from patent US 7932033. 555 bp unidentified QT-EVE-ZM-012 86 bp View
GY184378.1 emblrelpat Sequence 34 from patent US 7932033. 243 bp unidentified QT-EVE-ZM-012 86 bp View
GY239940.1 emblrelpat Sequence 21 from patent US 7956246. 3594 bp unidentified QT-EVE-ZM-012 86 bp View
GY239942.1 emblrelpat Sequence 23 from patent US 7956246. 11922 bp unidentified QT-EVE-ZM-012 86 bp View
GY239951.1 emblrelpat Sequence 32 from patent US 7956246. 555 bp unidentified QT-EVE-ZM-012 86 bp View
GY239953.1 emblrelpat Sequence 34 from patent US 7956246. 243 bp unidentified QT-EVE-ZM-012 86 bp View
HJ695446.1 emblrelpat Sequence 21 from patent US 8592653. 3594 bp unidentified QT-EVE-ZM-012 86 bp View
HJ695448.1 emblrelpat Sequence 23 from patent US 8592653. 11922 bp unidentified QT-EVE-ZM-012 86 bp View
HJ695457.1 emblrelpat Sequence 32 from patent US 8592653. 555 bp unidentified QT-EVE-ZM-012 86 bp View
HJ695459.1 emblrelpat Sequence 34 from patent US 8592653. 243 bp unidentified QT-EVE-ZM-012 86 bp View
HK420660.1 emblrelpat Sequence 21 from patent US 8952223. 3594 bp unidentified QT-EVE-ZM-012 86 bp View
HK420662.1 emblrelpat Sequence 23 from patent US 8952223. 11922 bp unidentified QT-EVE-ZM-012 86 bp View
HK420671.1 emblrelpat Sequence 32 from patent US 8952223. 555 bp unidentified QT-EVE-ZM-012 86 bp View
HK420673.1 emblrelpat Sequence 34 from patent US 8952223. 243 bp unidentified QT-EVE-ZM-012 86 bp View
HW057197.1 emblrelpat JP 2012245004-A/21: CORN EVENT DAS-... 3594 bp synthetic construct QT-EVE-ZM-012 86 bp View
HW057199.1 emblrelpat JP 2012245004-A/23: CORN EVENT DAS-... 11922 bp synthetic construct QT-EVE-ZM-012 86 bp View
HW057208.1 emblrelpat JP 2012245004-A/32: CORN EVENT DAS-... 555 bp synthetic construct QT-EVE-ZM-012 86 bp View
HW057210.1 emblrelpat JP 2012245004-A/34: CORN EVENT DAS-... 243 bp synthetic construct QT-EVE-ZM-012 86 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.