Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 10340 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A05361.1 emblrelpat Synthetic CaMV DNA sequence of 35S3... 1388 bp synthetic construct QT-ELE-00-001 79 bp View
A05521.1 emblrelpat pRT100 DNA sequence 711 bp synthetic construct QT-ELE-00-001 79 bp View
A09031.1 emblrelpat Unclassified sequenced of the 35S3 ... 1388 bp unclassified sequences QT-ELE-00-001 79 bp View
A17370.1 emblrelpat Artificial promoter-,polylinker- an... 793 bp synthetic construct QT-ELE-00-001 79 bp View
A17373.1 emblrelpat Artificial phosphinothricinacetyltr... 793 bp synthetic construct QT-ELE-00-001 79 bp View
A17374.1 emblrelpat Artificial phosphinothricinacetyltr... 793 bp synthetic construct QT-ELE-00-001 79 bp View
A18050.1 emblrelpat DNA for transforming monocotyledono... 5399 bp synthetic construct QT-ELE-00-001 79 bp View
A18053.1 emblrelpat DNA for transforming monocotyledono... 4883 bp synthetic construct QT-ELE-00-001 79 bp View
A23334.1 emblrelpat PVE108 plasmid DNA 5620 bp Escherichia coli QT-ELE-00-001 79 bp View
A23633.1 emblrelpat Plasmid pVE149 6376 bp unidentified QT-ELE-00-001 79 bp View
A23998.1 emblrelpat pTE4 expression vector 7049 bp synthetic construct QT-ELE-00-001 79 bp View
A24782.1 emblrelpat plasmid pJD884 replicable en E.coli 7639 bp Escherichia coli QT-ELE-00-001 79 bp View
A24783.1 emblrelpat plasmid pPS0212 replicable en E.coli 7566 bp synthetic construct QT-ELE-00-001 79 bp View
A26453.1 emblrelpat Recombinant soya beta-1,3-glucanase... 1829 bp Glycine max QT-ELE-00-001 79 bp View
A31176.1 emblrelpat phosphinothriciacetyltransferase DN... 793 bp unidentified QT-ELE-00-001 79 bp View
A31677.1 emblrelpat phosphinothriciacetyltransferase DN... 793 bp unidentified QT-ELE-00-001 79 bp View
A32909.1 emblrelpat Chimeric endochitinase gene 1863 bp Nicotiana tabacum QT-ELE-00-001 79 bp View
A40108.1 emblrelpat Sequence 16 from Patent WO9421793. 1863 bp unidentified QT-ELE-00-001 79 bp View
A41016.1 emblrelpat Sequence 3 from Patent EP0626449. 439 bp unidentified QT-ELE-00-001 79 bp View
A41018.1 emblrelpat Sequence 5 from Patent EP0626449. 1722 bp unidentified QT-ELE-00-001 79 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.