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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1055 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
CS029077.1 emblrelpat Sequence 150 from Patent WO2004113528. 662 bp synthetic construct QL-ELE-00-024 87 bp View
CS029082.1 emblrelpat Sequence 155 from Patent WO2004113528. 662 bp synthetic construct QL-ELE-00-024 87 bp View
CS106598.1 emblrelpat Sequence 13 from Patent WO2005049646. 3074 bp synthetic construct QL-ELE-00-024 87 bp View
CS133151.1 emblrelpat Sequence 5 from Patent WO2005059147. 3048 bp synthetic construct QL-ELE-00-024 87 bp View
CS180351.1 emblrelpat Sequence 3 from Patent WO2005094562. 3560 bp synthetic construct QL-ELE-00-024 87 bp View
CS204337.1 emblrelpat Sequence 45 from Patent WO2005108568. 6323 bp synthetic construct QL-ELE-00-024 87 bp View
CS204343.1 emblrelpat Sequence 51 from Patent WO2005108568. 15506 bp synthetic construct QL-ELE-00-024 87 bp View
CS240018.1 emblrelpat Sequence 8 from Patent WO2005117568. 3077 bp synthetic construct QL-ELE-00-024 87 bp View
CS250102.1 emblrelpat Sequence 41 from Patent WO2005123926. 3328 bp synthetic construct QL-ELE-00-024 87 bp View
CS250104.1 emblrelpat Sequence 43 from Patent WO2005123926. 2746 bp synthetic construct QL-ELE-00-024 87 bp View
CS353195.1 emblrelpat Sequence 44 from Patent WO2006069201. 4276 bp synthetic construct QL-ELE-00-024 87 bp View
CS353195.1 emblrelpat Sequence 44 from Patent WO2006069201. 4276 bp synthetic construct QL-ELE-00-024 87 bp View
CS401504.1 emblrelpat Sequence 1 from Patent WO2006013072. 12287 bp unidentified QL-ELE-00-024 87 bp View
CS401504.1 emblrelpat Sequence 1 from Patent WO2006013072. 12287 bp unidentified QL-ELE-00-024 87 bp View
CS401505.1 emblrelpat Sequence 2 from Patent WO2006013072. 12261 bp unidentified QL-ELE-00-024 87 bp View
CS401505.1 emblrelpat Sequence 2 from Patent WO2006013072. 12261 bp unidentified QL-ELE-00-024 87 bp View
CS401506.1 emblrelpat Sequence 3 from Patent WO2006013072. 6256 bp synthetic construct QL-ELE-00-024 87 bp View
CS401507.1 emblrelpat Sequence 4 from Patent WO2006013072. 6230 bp synthetic construct QL-ELE-00-024 87 bp View
CS401508.1 emblrelpat Sequence 5 from Patent WO2006013072. 11614 bp unidentified QL-ELE-00-024 87 bp View
CS401509.1 emblrelpat Sequence 6 from Patent WO2006013072. 11588 bp unidentified QL-ELE-00-024 87 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.