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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AP018594.1 nt Gateway vector R4pMpGWB154 DNA, com... 11339 bp Gateway vector R4pMpGWB154 QL-ELE-00-023 137 bp View
AP018595.1 nt Gateway vector R4pMpGWB156 DNA, com... 11897 bp Gateway vector R4pMpGWB156 QL-ELE-00-023 137 bp View
AP018596.1 nt Gateway vector R4pMpGWB157 DNA, com... 11390 bp Gateway vector R4pMpGWB157 QL-ELE-00-023 137 bp View
AP018597.1 nt Gateway vector R4pMpGWB194 DNA, com... 12068 bp Gateway vector R4pMpGWB194 QL-ELE-00-023 137 bp View
AP018598.1 nt Gateway vector R4pMpGWB195 DNA, com... 11966 bp Gateway vector R4pMpGWB195 QL-ELE-00-023 137 bp View
AP018599.1 nt Gateway vector R4pMpGWB201 DNA, com... 10743 bp Gateway vector R4pMpGWB201 QL-ELE-00-023 135 bp View
AP018600.1 nt Gateway vector R4pMpGWB204 DNA, com... 12549 bp Gateway vector R4pMpGWB204 QL-ELE-00-023 135 bp View
AP018601.1 nt Gateway vector R4pMpGWB207 DNA, com... 11454 bp Gateway vector R4pMpGWB207 QL-ELE-00-023 135 bp View
AP018602.1 nt Gateway vector R4pMpGWB209 DNA, com... 10761 bp Gateway vector R4pMpGWB209 QL-ELE-00-023 135 bp View
AP018603.1 nt Gateway vector R4pMpGWB231 DNA, com... 12486 bp Gateway vector R4pMpGWB231 QL-ELE-00-023 135 bp View
AP018604.1 nt Gateway vector R4pMpGWB239 DNA, com... 11454 bp Gateway vector R4pMpGWB239 QL-ELE-00-023 135 bp View
AP018605.1 nt Gateway vector R4pMpGWB254 DNA, com... 10857 bp Gateway vector R4pMpGWB254 QL-ELE-00-023 135 bp View
AP018606.1 nt Gateway vector R4pMpGWB256 DNA, com... 11415 bp Gateway vector R4pMpGWB256 QL-ELE-00-023 135 bp View
AP018607.1 nt Gateway vector R4pMpGWB257 DNA, com... 10908 bp Gateway vector R4pMpGWB257 QL-ELE-00-023 135 bp View
AP018608.1 nt Gateway vector R4pMpGWB294 DNA, com... 11586 bp Gateway vector R4pMpGWB294 QL-ELE-00-023 135 bp View
AP018609.1 nt Gateway vector R4pMpGWB295 DNA, com... 11484 bp Gateway vector R4pMpGWB295 QL-ELE-00-023 135 bp View
AP018610.1 nt Gateway vector R4pMpGWB301 DNA, com... 12177 bp Gateway vector R4pMpGWB301 QL-ELE-00-023 137 bp View
AP018611.1 nt Gateway vector R4pMpGWB304 DNA, com... 13983 bp Gateway vector R4pMpGWB304 QL-ELE-00-023 137 bp View
AP018612.1 nt Gateway vector R4pMpGWB307 DNA, com... 12888 bp Gateway vector R4pMpGWB307 QL-ELE-00-023 137 bp View
AP018613.1 nt Gateway vector R4pMpGWB309 DNA, com... 12195 bp Gateway vector R4pMpGWB309 QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.