Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF234314.1 nt Binary vector pCAMBIA-2201, complet... 11785 bp Binary vector pCAMBIA-2201 QL-ELE-00-023 137 bp View
AF234315.1 nt Binary vector pCAMBIA-2300, complet... 8742 bp Binary vector pCAMBIA-2300 QL-ELE-00-023 137 bp View
AF234316.1 nt Binary vector pCAMBIA-2301, complet... 11633 bp Binary vector pCAMBIA-2301 QL-ELE-00-023 137 bp View
AF294976.1 nt Cloning vector pC1300intA, complete... 9148 bp Cloning vector pC1300intA QL-ELE-00-023 137 bp View
AF294977.1 nt Cloning vector pC1300intB, complete... 9170 bp Cloning vector pC1300intB QL-ELE-00-023 137 bp View
AF294978.1 nt Cloning vector pC1300intC, complete... 9182 bp Cloning vector pC1300intC QL-ELE-00-023 137 bp View
AF294979.1 nt Binary vector pINDEX1, complete seq... 14203 bp Binary vector pINDEX1 QL-ELE-00-023 137 bp View
AF294980.1 nt Binary vector pINDEX2, complete seq... 14230 bp Binary vector pINDEX2 QL-ELE-00-023 137 bp View
AF294981.1 nt Binary vector pINDEX4, complete seq... 12072 bp Binary vector pINDEX4 QL-ELE-00-023 137 bp View
AF294982.1 nt Binary vector pINDEX3, complete seq... 12942 bp Binary vector pINDEX3 QL-ELE-00-023 137 bp View
AF354045.1 nt Binary vector pCAMBIA-1305.1, compl... 11846 bp Binary vector pCAMBIA-1305.1 QL-ELE-00-023 137 bp View
AF354046.1 nt Binary vector pCAMBIA-1305.2, compl... 11921 bp Binary vector pCAMBIA-1305.2 QL-ELE-00-023 137 bp View
AM235741.1 nt Synthetic construct for plastid to ... 3477 bp synthetic construct QL-ELE-00-023 137 bp View
AM887683.1 nt Transformation vector pICH14313 4991 bp Transformation vector pICH14313 QL-ELE-00-023 137 bp View
AP018588.1 nt Gateway vector R4pMpGWB101 DNA, com... 11225 bp Gateway vector R4pMpGWB101 QL-ELE-00-023 137 bp View
AP018589.1 nt Gateway vector R4pMpGWB104 DNA, com... 13031 bp Gateway vector R4pMpGWB104 QL-ELE-00-023 137 bp View
AP018590.1 nt Gateway vector R4pMpGWB107 DNA, com... 11936 bp Gateway vector R4pMpGWB107 QL-ELE-00-023 137 bp View
AP018591.1 nt Gateway vector R4pMpGWB109 DNA, com... 11243 bp Gateway vector R4pMpGWB109 QL-ELE-00-023 137 bp View
AP018592.1 nt Gateway vector R4pMpGWB131 DNA, com... 12968 bp Gateway vector R4pMpGWB131 QL-ELE-00-023 137 bp View
AP018593.1 nt Gateway vector R4pMpGWB139 DNA, com... 11936 bp Gateway vector R4pMpGWB139 QL-ELE-00-023 137 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.