European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF234294.1 nt Binary vector pCAMBIA-1281Z, comple... 11378 bp Binary vector pCAMBIA-1281Z QL-ELE-00-023 137 bp View
AF234295.1 nt Binary vector pCAMBIA-1291Z, comple... 11378 bp Binary vector pCAMBIA-1291Z QL-ELE-00-023 137 bp View
AF234296.1 nt Binary vector pCAMBIA-1300, complet... 8958 bp Binary vector pCAMBIA-1300 QL-ELE-00-023 137 bp View
AF234297.1 nt Binary vector pCAMBIA-1301, complet... 11849 bp Binary vector pCAMBIA-1301 QL-ELE-00-023 137 bp View
AF234298.1 nt Binary vector pCAMBIA-1302, complet... 10549 bp Binary vector pCAMBIA-1302 QL-ELE-00-023 137 bp View
AF234299.1 nt Binary vector pCAMBIA-1303, complet... 12361 bp Binary vector pCAMBIA-1303 QL-ELE-00-023 137 bp View
AF234300.1 nt Binary vector pCAMBIA-1304, complet... 12361 bp Binary vector pCAMBIA-1304 QL-ELE-00-023 137 bp View
AF234301.1 nt Binary vector pCAMBIA-1380, complet... 8860 bp Binary vector pCAMBIA-1380 QL-ELE-00-023 137 bp View
AF234302.1 nt Binary vector pCAMBIA-1381, complet... 10657 bp Binary vector pCAMBIA-1381 QL-ELE-00-023 137 bp View
AF234303.1 nt Binary vector pCAMBIA-1381Xa, compl... 10645 bp Binary vector pCAMBIA-1381Xa QL-ELE-00-023 137 bp View
AF234304.1 nt Binary vector pCAMBIA-1381Xb, compl... 10646 bp Binary vector pCAMBIA-1381Xb QL-ELE-00-023 137 bp View
AF234305.1 nt Binary vector pCAMBIA-1381Xc, compl... 10647 bp Binary vector pCAMBIA-1381Xc QL-ELE-00-023 137 bp View
AF234306.1 nt Binary vector pCAMBIA-1381Z, comple... 11226 bp Binary vector pCAMBIA-1381Z QL-ELE-00-023 137 bp View
AF234307.1 nt Binary vector pCAMBIA-1390, complet... 8860 bp Binary vector pCAMBIA-1390 QL-ELE-00-023 137 bp View
AF234308.1 nt Binary vector pCAMBIA-1391, complet... 10657 bp Binary vector pCAMBIA-1391 QL-ELE-00-023 137 bp View
AF234309.1 nt Binary vector pCAMBIA-1391Xa, compl... 10645 bp Binary vector pCAMBIA-1391Xa QL-ELE-00-023 137 bp View
AF234310.1 nt Binary vector pCAMBIA-1391Xb, compl... 10646 bp Binary vector pCAMBIA-1391Xb QL-ELE-00-023 137 bp View
AF234311.1 nt Binary vector pCAMBIA-1391Xc, compl... 10647 bp Binary vector pCAMBIA-1391Xc QL-ELE-00-023 137 bp View
AF234312.1 nt Binary vector pCAMBIA-1391Z, comple... 11226 bp Binary vector pCAMBIA-1391Z QL-ELE-00-023 137 bp View
AF234313.1 nt Binary vector pCAMBIA-2200, complet... 8894 bp Binary vector pCAMBIA-2200 QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.