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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB684640.1 nt Cloning vector pSolycp00015 DNA, co... 11782 bp Cloning vector pSolycp00015 QL-ELE-00-023 137 bp View
AB684641.1 nt Cloning vector pSolycp00016 DNA, co... 11812 bp Cloning vector pSolycp00016 QL-ELE-00-023 137 bp View
AB684642.1 nt Cloning vector pSolycp00017 DNA, co... 11812 bp Cloning vector pSolycp00017 QL-ELE-00-023 137 bp View
AB684643.1 nt Cloning vector pSolycp00018 DNA, co... 11812 bp Cloning vector pSolycp00018 QL-ELE-00-023 137 bp View
AB684644.1 nt Cloning vector pSolycp00019 DNA, co... 11812 bp Cloning vector pSolycp00019 QL-ELE-00-023 137 bp View
AB684645.1 nt Cloning vector pSolycp00020 DNA, co... 11809 bp Cloning vector pSolycp00020 QL-ELE-00-023 137 bp View
AB684646.1 nt Cloning vector pSolycp00021 DNA, co... 11826 bp Cloning vector pSolycp00021 QL-ELE-00-023 137 bp View
AB684647.1 nt Cloning vector pSolycp00022 DNA, co... 11816 bp Cloning vector pSolycp00022 QL-ELE-00-023 137 bp View
AB684648.1 nt Cloning vector pSolycp00023 DNA, co... 11846 bp Cloning vector pSolycp00023 QL-ELE-00-023 137 bp View
AB684649.1 nt Cloning vector pSolycp00024 DNA, co... 11504 bp Cloning vector pSolycp00024 QL-ELE-00-023 137 bp View
AB684650.1 nt Cloning vector pSolycp00025 DNA, co... 11730 bp Cloning vector pSolycp00025 QL-ELE-00-023 137 bp View
AB684651.1 nt Cloning vector pSolycp00026 DNA, co... 11824 bp Cloning vector pSolycp00026 QL-ELE-00-023 137 bp View
AB684652.1 nt Cloning vector pSolycp00027 DNA, co... 12076 bp Cloning vector pSolycp00027 QL-ELE-00-023 137 bp View
AB684653.1 nt Cloning vector pSolycp00028 DNA, co... 11841 bp Cloning vector pSolycp00028 QL-ELE-00-023 137 bp View
AB684654.1 nt Cloning vector pSolycp00029 DNA, co... 11806 bp Cloning vector pSolycp00029 QL-ELE-00-023 137 bp View
AB684655.1 nt Cloning vector pSolycp00030 DNA, co... 11783 bp Cloning vector pSolycp00030 QL-ELE-00-023 137 bp View
AB684656.1 nt Cloning vector pSolycp00031 DNA, co... 11961 bp Cloning vector pSolycp00031 QL-ELE-00-023 137 bp View
AB684657.1 nt Cloning vector pSolycp00032 DNA, co... 11832 bp Cloning vector pSolycp00032 QL-ELE-00-023 137 bp View
AF234292.1 nt Binary vector pCAMBIA-1200, complet... 9110 bp Binary vector pCAMBIA-1200 QL-ELE-00-023 137 bp View
AF234293.1 nt Binary vector pCAMBIA-1201, complet... 12001 bp Binary vector pCAMBIA-1201 QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.