JRC GMO-Amplicons | EURL GMFF

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown

Event-specific

Construct-specific

Element-specific

Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

GenBank nt section (NCBI)

emblreltgn

ENA transgenic data class division (EMBL-EBI)

emblrelpat

ENA patent data class division (EMBL-EBI)

nrnl1

Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:

Mismatches:

* required field

Results : 266 amplicons

Restrict to taxon(s):

Amplicons found in the selected databases
Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
JX139719.1	emblreltgn	Oryza sativa transgenic GM cassette...	985 bp	Oryza sativa	QL-CON-00-015	103 bp	View
JX139719.1	nt	Oryza sativa transgenic GM cassette...	985 bp	Oryza sativa	QL-CON-00-015	103 bp	View
JX139724.1	nt	Gossypium hirsutum transgenic strai...	428 bp	Gossypium hirsutum	QL-CON-00-015	136 bp	View
JX139724.1	emblreltgn	Gossypium hirsutum transgenic strai...	428 bp	Gossypium hirsutum	QL-CON-00-015	136 bp	View
KF036176.1	emblreltgn	Oryza sativa Indica Group transgeni...	2494 bp	Oryza sativa Indica Group	QL-CON-00-015	103 bp	View
KF036176.1	nt	Oryza sativa Indica Group transgeni...	2494 bp	Oryza sativa Indica Group	QL-CON-00-015	103 bp	View
KF719008.1	nt	Cloning vector pGGF002, complete se...	4314 bp	Cloning vector pGGF002	QL-CON-00-015	104 bp	View
LP789644.1	emblrelpat	Sequence 4 from Patent WO2018054911.	16730 bp	synthetic construct	QL-CON-00-015	136 bp	View
LQ672989.1	emblrelpat	Sequence 1 from Patent WO2016164810.	28014 bp	synthetic construct	QL-CON-00-015	130 bp	View
LQ672990.1	emblrelpat	Sequence 2 from Patent WO2016164810.	28323 bp	synthetic construct	QL-CON-00-015	130 bp	View
LQ912126.1	emblrelpat	Sequence 2 from Patent WO2018172181.	6276 bp	synthetic construct	QL-CON-00-015	136 bp	View
LQ969879.1	emblrelpat	Sequence 5 from Patent WO2014198885.	15461 bp	synthetic construct	QL-CON-00-015	136 bp	View
LQ986679.1	emblrelpat	Sequence 35 from Patent EP2573183.	9192 bp	synthetic construct	QL-CON-00-015	102 bp	View
LY486204.1	emblrelpat	KR 1020170014024-A/4: Method for en...	10154 bp	synthetic construct	QL-CON-00-015	110 bp	View
LY486656.1	emblrelpat	KR 1020170017549-A/4: Method for en...	10154 bp	synthetic construct	QL-CON-00-015	110 bp	View
LY705927.1	emblrelpat	KR 1020190051045-A/4: TARGETED GENO...	16730 bp	synthetic construct	QL-CON-00-015	136 bp	View
MI842167.1	emblrelpat	Sequence 12 from patent US 10006044.	1778 bp	unidentified	QL-CON-00-015	102 bp	View
MK791524.1	nt	Binary cloning vector pRGEB32Bar-Ca...	15357 bp	Binary cloning vector pRGEB32Bar-Cas9	QL-CON-00-015	132 bp	View
MM703494.1	emblrelpat	Sequence 10 from patent US 10202613.	3971 bp	unidentified	QL-CON-00-015	136 bp	View
MM703495.1	emblrelpat	Sequence 12 from patent US 10202613.	8491 bp	unidentified	QL-CON-00-015	136 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.