Match details
| Record ID: |
OR392453.1 |
| Database: |
nt |
Go to original record |
| Description: |
Vector pMON521-ToMoV{A}1.5mer, complete sequence. |
| Taxon: |
Vector pMON521-ToMoV{A}1.5mer |
| Original size: |
14747 bp |
View other 17 matches for this record
View other 1 match for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
13516 |
13620 |
- |
105 bp |
|
1 agcgcgcaaa ctaggataaa ttatcgcgcg cggtgtcatc tatgttacta
51 gatcgatcaa gtagatacac tacatatatc tacaatagac atcgagccgg
101 aaggt
View other 1 match with an identical amplicon
| Primers and probe alignment: |
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
5.26e-09 |
| primerB |
100.0 |
20 bp |
0 |
0 |
105 |
86 |
5.26e-09 |
| probe |
100.0 |
20 bp |
0 |
0 |
25 |
44 |
5.26e-09 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
