Match details
Record ID: |
KX640115.1 |
Database: |
nt |
Go to original record |
Description: |
Zea mays transgenic cultivar 631 RR2/Bt transgenic line NK603, complete sequence. |
Taxon: |
Zea mays |
Original size: |
7584 bp |
View other 51 matches for this record
View other 11 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
7119 |
7226 |
+ |
108 bp |
|
1 atgaatgacc tcgagtaagc ttgttaacgc ggccgcccta gggatatcaa
51 gcttggtacc acgcgacaca cttccactct agtgtttgag tggatcctgt
101 tatctctt
View other 11 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
27 bp |
0 |
0 |
1 |
27 |
9.65e-13 |
primerB |
100.0 |
28 bp |
0 |
0 |
108 |
81 |
2.81e-13 |
probe |
100.0 |
26 bp |
0 |
0 |
54 |
79 |
3.30e-12 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.