Match details

Record ID: NRN_CS540098
Database: nrnl1 Go to original record
Description: Sequence 16 from Patent WO2007012078. METHIONINE PRODUCING RECOMBINANT MICROORGANISMS. Sequence 33 from patent US 8163532. Sequence 33 from Patent WO2009144270.
Taxon: unidentified
Original size: 7534 bp
Patents: WO2007012078 (lens, espacenet) JP2009501550 (lens, espacenet) US8163532 (lens, espacenet) WO2009144270 (lens, espacenet)

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Method: QL-ELE-00-003 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of Neomycin phosphotransferase II gene (BVL L 00.00-31, 1998)
Target:nptII

View other 58813 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 3211 3383 + 173 bp

Amplicon: 173 bp
1     ggatctcctg tcatctcacc ttgctcctgc cgagaaagta tccatcatgg
51    ctgatgcaat gcggcggctg catacgcttg atccggctac ctgcccattc
101   gaccaccaag cgaaacatcg catcgagcga gcacgtactc ggatggaagc
151   cggtcttgtc gatcaggatg atc 

View other 57974 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 16 bp 0 0 1 16 1.08e-06
primerB 100.0 16 bp 0 0 173 158 1.08e-06


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.