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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: NRN_CS416151
Database: nrnl1 Go to original record
Description: Sequence 40 from Patent WO2006053169. Sequence 29 from Patent WO2006009659. Sequence 40 from patent US 7169969. Sequence 40 from patent US 7291765. Sequence 29 from patent US 7294756. Sequence 29 from patent US 7476778.
Taxon: unidentified
Original size: 8810 bp
Patents: WO2006053169 (lens, espacenet) WO2006009659 (lens, espacenet) US7169969 (lens, espacenet) US2006101545 (lens, espacenet) US7291765 (lens, espacenet) US2007163005 (lens, espacenet) US7294756 (lens, espacenet) US2006005280 (lens, espacenet) US7476778 (lens, espacenet) US2008172758 (lens, espacenet)

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Method: QL-ELE-00-011 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of nopaline synthase terminator.
Target:T-nos

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 2545 2628 - 84 bp
Amplicon: 84 bp 
1     catgtaatgc atgacgttat ttatgagatg ggtttttatg attagagtcc
51    cgcaattata catttaatac gcgatagaaa acaa

View other 30799 matches with an identical amplicon

Primers and probe alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 25 bp 0 0 1 25 9.20e-12
primerB 100.0 25 bp 0 0 84 60 9.20e-12
probe 100.0 28 bp 0 0 28 55 2.28e-13

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.