Match details
View other 13 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
79
208
+
130 bp
1 gttagaaaaa gtaaacaatt aatatagccg gctatttgtg taaaaatccc
51 taatataatc gacggatccc cgggaattcc gggggaagct tagatccatg
101 gatttgttat gataaccaaa aacaccctcc
View other 13 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
31 bp
0
0
1
31
8.34e-15
primerB
100.0
20 bp
0
0
130
111
6.57e-09
probe
100.0
28 bp
0
0
52
79
3.42e-13
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.