Match details
View other 13 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
141 |
263 |
+ |
123 bp |
|
1 caagatggga attaacatct acaaattgcc ttttcttatc gaccatgtac
51 atcctaccat aattataatt ataattatat aatactgaaa ccatggtgcc
101 ccctgctgct ttacatggat ttc
View other 6 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
28 bp |
0 |
0 |
1 |
28 |
3.22e-13 |
primerB |
100.0 |
23 bp |
0 |
0 |
123 |
101 |
1.60e-10 |
probe |
100.0 |
20 bp |
0 |
0 |
40 |
59 |
6.21e-09 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.