Match details
| Record ID: |
NRN_BD014475 |
| Database: |
nrnl1 |
Go to original record |
| Description: |
Transgenic corn and method of detecting recombinant gene from foods containing the same. |
| Taxon: |
unidentified |
| Original size: |
886 bp |
| Patents: |
JP2001136983 (lens, espacenet)
|
View other 1 match for this record
View other 199 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
651 |
779 |
+ |
129 bp |
|
1 cccatcgaca tcagcctgag cctgacccag ttcctgctga gcgagttcgt
51 gcccggcgcc ggcttcgtgc tgggcctggt ggacatcatc tggggcatct
101 tcggccccag ccagtgggac gccttcctg
View other 183 matches with an identical amplicon
| Primers and probe alignment: |
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
21 bp |
0 |
0 |
1 |
21 |
1.93e-09 |
| primerB |
100.0 |
20 bp |
0 |
0 |
129 |
110 |
6.52e-09 |
| probe |
100.0 |
21 bp |
0 |
0 |
86 |
66 |
1.93e-09 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
