Match details
Record ID: |
JQ406881.1 |
Database: |
emblreltgn |
Go to original record |
Description: |
Oryza sativa transgenic LLRICE62 5' insertion site genomic sequence. |
Taxon: |
Oryza sativa |
Original size: |
628 bp |
View other 1 match for this record
View other 8 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
166 |
253 |
- |
88 bp |
|
1 agctggcgta atagcgaaga ggcccgcacc gattatttat acttttagtc
51 cacctggttt ttattgatag acgatgcacc cgttagca
View other 6 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
22 bp |
0 |
0 |
1 |
22 |
3.82e-10 |
primerB |
100.0 |
21 bp |
0 |
0 |
88 |
68 |
1.29e-09 |
probe |
100.0 |
31 bp |
0 |
0 |
25 |
55 |
5.52e-15 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.