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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: EU124676.1
Database: emblreltgn Go to original record
Description: Brassica napus transgenic cultivar Topas 19/2 3'-terminal transgene junction sequence.
Taxon: Brassica napus
Original size: 823 bp

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Method: QL-CON-00-014 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of the junction between the nos promoter and the neomycin phosphotransferase II gene
Target:P-nos-nptII

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 184 327 - 144 bp
Amplicon: 144 bp 
1     ttcccctcgg tatccaatta gagtctcata ttcactctca atccagatct
51    gatcatgtgg attgaacaag atggattgca cgcaggttct ccggccgctt
101   gggtggagag gctattcggc tatgactggg cacaacagac aatc

View other 3 matches with an identical amplicon

Primers and probe alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 23 bp 0 0 1 23 1.77e-10
primerB 100.0 22 bp 0 0 144 123 5.98e-10
probe 100.0 25 bp 0 0 121 97 1.53e-11

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.