Match details

Record ID:	GP706137.1
Database:	emblrelpat	Go to original record
Description:	Sequence 233 from patent US 7598429.
Taxon:	unidentified
Original size:	4276 bp
Patents:	US7598429 (lens, espacenet)

View other 7 matches for this record

Method:	QT-ELE-00-001	Go to GMOMETHODS record
		View in JRC GMO-Matrix
Description:	Quantitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter (Feinberg et al., 2005).
Target:	CaMV P-35S

View other 10904 matches for this method

Predicted amplification details:

Mismatches	Gaps	From	To	Strand	Amplicon size
2	2	729	807	+	79 bp

Amplicon:

79 bp

1     cgtcttcaaa gcaagtggat tgatgtgata tctccactga cgtaagggat
51    gacgcacaat cccactatcc ttcggcggc

View other 16 matches with an identical amplicon

Primers and probe alignment:

Primer/Probe	% Identity	Length	Mismatches	Gaps	From	To	Score
primerA	100.0	22 bp	0	0	1	22	3.41e-10
primerB	100.0	17 bp	0	0	74	58	2.05e-07
probe	100.0	26 bp	0	0	31	56	2.52e-12

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.