Match details
| Record ID: |
DI119995.1 |
| Database: |
emblrelpat |
Go to original record |
| Description: |
ISOFORMS OF EIF-5A: SENESCENCE-INDUCED EIF5A;WOUNDING-INDUCED EIF-5A; GROWTH EIF-5A; AND DHS. |
| Taxon: |
unidentified |
| Original size: |
662 bp |
View other 1054 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
170 |
257 |
+ |
88 bp |
|
1 tttttattcg gttttcgcta tcgaactgtg caaatggaaa tggatggaga
51 agagttaatg aatgatatgg tccttttgtt cattctca
View other 10 matches with an identical amplicon
| Primers and probe alignment: |
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
23 bp |
0 |
0 |
1 |
23 |
1.13e-10 |
| primerB |
100.0 |
26 bp |
0 |
0 |
88 |
63 |
2.82e-12 |
| probe |
97.3 |
37 bp |
0 |
1 |
61 |
25 |
5.12e-16 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
