Match details
Record ID: |
AR373962.1 |
Database: |
emblrelpat |
Go to original record |
Description: |
Sequence 8 from patent US 6603062. |
Taxon: |
unidentified |
Original size: |
4186 bp |
Patents: |
US6603062 (lens, espacenet)
|
View other 12 matches for this record
Method: |
QL-CON-00-005 |
Go to GMOMETHODS record |
|
View in JRC GMO-Matrix
|
Description: | Qualitative PCR method for detection of the junction between the pat gene and the CaMV35S terminator (ISO/FDIS 21569:2005). |
Target: | pat-CaMV T-35S |
View other 212 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
345 |
535 |
- |
191 bp |
|
1 atggtggatg gcatgatgtt ggtttttggc aaagggattt tgagttgcca
51 gctcctccaa ggccagttag gccagttacc cagatctgac gctgaaatca
101 ccagtctctc tctacaaatc tatctctctc tataataatg tgtgagtagt
151 tcccagataa gggaattagg gttcttatag ggtttcgctc a
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
21 bp |
0 |
0 |
1 |
21 |
2.71e-09 |
primerB |
100.0 |
23 bp |
0 |
0 |
191 |
169 |
2.37e-10 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.