Match details
Record ID: |
GM840915.1 |
Database: |
emblrelpat |
Go to original record |
Description: |
Sequence 2 from Patent WO2008122406. |
Taxon: |
synthetic construct |
Original size: |
452 bp |
Patents: |
WO2008122406 (lens, espacenet)
|
View other 4 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
3 |
80 |
+ |
78 bp |
|
1 agcgcgcaaa ctaggataaa ttatcgcgcg cggtgtcatc tatctccttt
51 ttcttttcaa gttatcccaa gatctagg
View other 4 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
22 bp |
0 |
0 |
1 |
22 |
3.36e-10 |
primerB |
100.0 |
27 bp |
0 |
0 |
78 |
52 |
7.23e-13 |
probe |
100.0 |
23 bp |
0 |
0 |
24 |
46 |
9.90e-11 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.