Match details

Record ID: DJ058152.1
Database: emblrelpat Go to original record
Description: Corn Plant MON88017 and Compositions and Methods for Detection Thereof.
Taxon: synthetic construct
Original size: 7450 bp
Patents: JP2007513641 (lens, espacenet)

View other 17 matches for this record


Method: QT-EVE-ZM-016 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Quantitative PCR method for detection of maize event MON88017 (Charles Delobel et al., 2008).
Target:MON 88017

View other 34 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 1 7165 7258 + 94 bp

Amplicon: 94 bp
1     gagcaggacc tgcagaagct agcttgatgg ggatcagatt gtcgtttccc
51    gccttcagtt taaacagagt cgggtttgga tggtcaactc cggc 

View other 13 matches with an identical amplicon


Primers and probe alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 20 bp 0 0 1 20 4.68e-09
primerB 100.0 17 bp 0 0 93 77 1.89e-07
probe 100.0 29 bp 0 0 47 75 7.05e-14


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.