Match details
Record ID: |
LP059342.1 |
Database: |
emblrelpat |
Go to original record |
Description: |
Sequence 10 from Patent EP2846621. |
Taxon: |
synthetic construct |
Original size: |
338 bp |
Patents: |
EP2846621 (lens, espacenet)
|
View other 14 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
31 |
139 |
+ |
109 bp |
|
1 ctctgtaaca gaaaacacca tctagagcgg ccgcgtttaa actatcagtg
51 tttagagaat cacaaacctc tagatgtatt aatctaccct agaactagtt
101 cacttttgt
View other 14 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
27 bp |
0 |
0 |
1 |
27 |
9.74e-13 |
primerB |
100.0 |
28 bp |
0 |
0 |
109 |
82 |
2.84e-13 |
probe |
100.0 |
30 bp |
0 |
0 |
31 |
60 |
2.39e-14 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.