Match details
Record ID: |
JA396789.1 |
Database: |
emblrelpat |
Go to original record |
Description: |
Sequence 8 from Patent EP2333082. |
Taxon: |
synthetic construct |
Original size: |
562 bp |
Patents: |
EP2333082 (lens, espacenet)
|
View other 11 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
262 |
372 |
+ |
111 bp |
|
1 ctcattgctg atccatgtag atttccctta cttgtctccc tctaatctga
51 ctttattaac ccaaagcaat tgcttatttg ttccccacgc ccacaaagcc
101 cagcattgtc c
View other 11 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
25 bp |
0 |
0 |
1 |
25 |
1.24e-11 |
primerB |
100.0 |
20 bp |
0 |
0 |
111 |
92 |
5.57e-09 |
probe |
100.0 |
33 bp |
0 |
0 |
64 |
32 |
5.90e-16 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.