Match details
| Record ID: |
HZ345403.1 |
| Database: |
emblrelpat |
Go to original record |
| Description: |
JP 2015519051-A/9: CORN EVENT MON 87411. |
| Taxon: |
synthetic construct |
| Original size: |
173 bp |
| Patents: |
JP2015519051 (lens, espacenet)
|
View other 14 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
31 |
139 |
+ |
109 bp |
|
1 ctctgtaaca gaaaacacca tctagagcgg ccgcgtttaa actatcagtg
51 tttagagaat cacaaacctc tagatgtatt aatctaccct agaactagtt
101 cacttttgt
View other 14 matches with an identical amplicon
| Primers and probe alignment: |
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
27 bp |
0 |
0 |
1 |
27 |
9.74e-13 |
| primerB |
100.0 |
28 bp |
0 |
0 |
109 |
82 |
2.84e-13 |
| probe |
100.0 |
30 bp |
0 |
0 |
31 |
60 |
2.39e-14 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
