Match details

Record ID: DI201813.1
Database: emblrelpat Go to original record
Description: KR 1020110126306-A/53: A method for analyzing GMO using competitive PCR.
Taxon: artificial sequences
Original size: 1650 bp
Patents: KR1020110126306 (lens, espacenet)

View other 2 matches for this record


Method: QT-CON-00-002 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Quantitative PCR method for detection of the junction between the CTP sequence and the CP4 epsps gene (Hird et al., 2003).
Target:CTP-CP4 epsps

View other 26 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 218 305 + 88 bp

Amplicon: 88 bp
1     ggatttcagc atcagtggct acagcctgca tgcttcacgg tgcaagcagc
51    cggcccgcaa ccgcccgcaa atcctctggc ctttccgg 

View other 24 matches with an identical amplicon


Primers and probe alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 23 bp 0 0 1 23 1.13e-10
primerB 100.0 18 bp 0 0 88 71 4.89e-08
probe 100.0 21 bp 0 0 53 33 1.29e-09


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.