Match details

Record ID: MI842689.1
Database: emblrelpat Go to original record
Description: Sequence 5 from patent US 10006046.
Taxon: unidentified
Original size: 12208 bp
Patents: US10006046 (lens, espacenet)

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Method: QL-ELE-00-020 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of cry1A(b) gene (Barbau-Piednoir et al., 2014).
Target:cryIAb

View other 267 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
2 0 3334 3406 + 73 bp

Amplicon: 73 bp
1     accggttaca cccccatcga catctccctc tccctcacgc agttcctgct
51    cagcgagttc gtgccaggcg ctg 

View other 30 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerB 94.7 19 bp 1 0 73 55 5.59e-07


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.