Match details
| Record ID: |
GY225124.1 |
| Database: |
emblrelpat |
Go to original record |
| Description: |
Sequence 2 from patent US 7928295. |
| Taxon: |
unidentified |
| Original size: |
607 bp |
| Patents: |
US7928295 (lens, espacenet)
|
| Method: |
QL-EVE-OS-001 |
Go to GMOMETHODS record |
|
View in JRC GMO-Matrix
|
|
| Description: | Qualitative PCR method for detection of rice event LLRICE601 (verified by the EU-RL GMFF in the context of Commission Decision 2006/578/EC) |
| Target: | LLRICE601 |
View other 2 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
49 |
114 |
+ |
66 bp |
|
1 tctaggatcc gaagcagatc gttccacctc ccaacaataa aagcgcctgc
51 acactccgcg ccctcc
View other 2 matches with an identical amplicon
| Primers and probe alignment: |
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
22 bp |
0 |
0 |
1 |
22 |
2.81e-10 |
| primerB |
100.0 |
16 bp |
0 |
0 |
66 |
51 |
4.36e-07 |
| probe |
100.0 |
26 bp |
0 |
0 |
24 |
49 |
2.07e-12 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
