Match details
Record ID: |
GY186696.1 |
Database: |
emblrelpat |
Go to original record |
Description: |
Sequence 1 from patent US 7932439. |
Taxon: |
unidentified |
Original size: |
1214 bp |
Patents: |
US7932439 (lens, espacenet)
|
View other 5 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
705 |
824 |
+ |
120 bp |
|
1 caaatacact tggaacgact tcgttttagg ctccatggcg atcgctacgt
51 atctagaatt cctgcaggtc gagtcgcgac gtacgttcga acaattggtt
101 ttaaaagctt gcatgcctgc
View other 5 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
24 bp |
0 |
0 |
1 |
24 |
4.30e-11 |
primerB |
100.0 |
21 bp |
0 |
0 |
120 |
100 |
1.79e-09 |
probe |
96.7 |
30 bp |
0 |
1 |
31 |
60 |
4.25e-12 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.