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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB054236.1 nt Cinnamomum cassia chloroplast trnL ... 553 bp Cinnamomum aromaticum QL-PLN-00-007 553 bp View
AB054242.1 nt Cinnamomum zeylanicum chloroplast t... 553 bp Cinnamomum verum QL-PLN-00-007 553 bp View
AB070919.1 nt Taraxacum officinale chloroplast DN... 1488 bp Taraxacum officinale QL-PLN-00-007 527 bp View
AB070920.1 nt Taraxacum officinale chloroplast DN... 1488 bp Taraxacum officinale QL-PLN-00-007 527 bp View
AB070921.1 nt Taraxacum officinale chloroplast DN... 1488 bp Taraxacum officinale QL-PLN-00-007 527 bp View
AB070922.1 nt Taraxacum officinale chloroplast DN... 1488 bp Taraxacum officinale QL-PLN-00-007 527 bp View
AB070923.1 nt Taraxacum laevigatum chloroplast DN... 1488 bp Taraxacum laevigatum QL-PLN-00-007 527 bp View
AB234981.1 nt Ampelocissus elegans chloroplast DN... 1033 bp Ampelocissus elegans QL-PLN-00-007 597 bp View
AB234983.1 nt Ampelocissus gracilis chloroplast D... 1012 bp Ampelocissus gracilis QL-PLN-00-007 597 bp View
AB234984.1 nt Ampelocissus javalensis chloroplast... 1028 bp Ampelocissus javalensis QL-PLN-00-007 592 bp View
AB234985.1 nt Ampelocissus martinii chloroplast D... 1012 bp Ampelocissus martinii QL-PLN-00-007 592 bp View
AB234986.1 nt Ampelocissus polystachya chloroplas... 1014 bp Ampelocissus polystachya QL-PLN-00-007 597 bp View
AB234992.1 nt Ampelopsis brevipedunculata chlorop... 1031 bp Ampelopsis glandulosa var. brevipedunculata QL-PLN-00-007 592 bp View
AB234994.1 nt Ampelopsis cantoniensis chloroplast... 1005 bp Nekemias cantoniensis QL-PLN-00-007 592 bp View
AB234995.1 nt Ampelopsis cantoniensis chloroplast... 1010 bp Nekemias cantoniensis QL-PLN-00-007 592 bp View
AB235006.1 nt Cayratia pseudotrifolia chloroplast... 1006 bp none QL-PLN-00-007 578 bp View
AB235007.1 nt Cayratia trifolia chloroplast DNA, ... 998 bp Causonis trifolia QL-PLN-00-007 571 bp View
AB235011.1 nt Cissus discolor chloroplast DNA, tr... 1025 bp Cissus discolor QL-PLN-00-007 586 bp View
AB235013.1 nt Cissus incisa chloroplast DNA, trnL... 1012 bp Cissus incisa QL-PLN-00-007 577 bp View
AB235014.1 nt Cissus incisa chloroplast DNA, trnL... 1014 bp Cissus incisa QL-PLN-00-007 578 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.