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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 10 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LY410067.1 emblrelpat KR 1020160134709-A/7: TRANSGENIC MA... 1771 bp synthetic construct QT-EVE-ZM-029 97 bp View
LY410070.1 emblrelpat KR 1020160134709-A/10: TRANSGENIC M... 9259 bp synthetic construct QT-EVE-ZM-029 97 bp View
MA743870.1 emblrelpat JP 2017512497-A/7: Transgenic Maize... 1771 bp synthetic construct QT-EVE-ZM-029 97 bp View
MA743873.1 emblrelpat JP 2017512497-A/10: Transgenic Maiz... 9259 bp synthetic construct QT-EVE-ZM-029 97 bp View
MM133590.1 emblrelpat Sequence 7 from patent US 10113178. 1771 bp unidentified QT-EVE-ZM-029 97 bp View
MM133593.1 emblrelpat Sequence 10 from patent US 10113178. 9259 bp unidentified QT-EVE-ZM-029 97 bp View
MS934372.1 emblrelpat Sequence 7 from Patent EP3119186. 1771 bp synthetic construct QT-EVE-ZM-029 97 bp View
MS934375.1 emblrelpat Sequence 10 from Patent EP3119186. 9259 bp synthetic construct QT-EVE-ZM-029 97 bp View
MY406817.1 emblrelpat Sequence 7 from patent US 11098321. 1771 bp unidentified QT-EVE-ZM-029 97 bp View
MY406820.1 emblrelpat Sequence 10 from patent US 11098321. 9259 bp unidentified QT-EVE-ZM-029 97 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.