European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 9 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HJ692005.1 emblrelpat Sequence 6 from patent US 8575434. 16752 bp unidentified QT-EVE-ZM-026 80 bp View
JC170512.1 emblrelpat Sequence 6 from Patent WO2013149018. 16752 bp synthetic construct QT-EVE-ZM-026 80 bp View
JC170541.1 emblrelpat Sequence 35 from Patent WO2013149018. 149 bp synthetic construct QT-EVE-ZM-026 80 bp View
MI019115.1 emblrelpat Sequence 6 from patent US 9725772. 16752 bp unidentified QT-EVE-ZM-026 80 bp View
MI019144.1 emblrelpat Sequence 35 from patent US 9725772. 149 bp unidentified QT-EVE-ZM-026 80 bp View
MI123454.1 emblrelpat Sequence 6 from patent US 9790561. 16752 bp unidentified QT-EVE-ZM-026 80 bp View
MM610850.1 emblrelpat Sequence 6 from patent US 10190179. 16752 bp unidentified QT-EVE-ZM-026 80 bp View
MO361552.1 emblrelpat Sequence 6 from patent US 10407688. 16752 bp unidentified QT-EVE-ZM-026 80 bp View
MO361581.1 emblrelpat Sequence 35 from patent US 10407688. 149 bp unidentified QT-EVE-ZM-026 80 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.