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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 15 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HL867351.1 emblrelpat Sequence 1 from patent US 9365863. 12248 bp unidentified QT-EVE-ZM-024 109 bp View
HL867359.1 emblrelpat Sequence 9 from patent US 9365863. 173 bp unidentified QT-EVE-ZM-024 109 bp View
HL867360.1 emblrelpat Sequence 10 from patent US 9365863. 338 bp unidentified QT-EVE-ZM-024 109 bp View
HZ345395.1 emblrelpat JP 2015519051-A/1: CORN EVENT MON 8... 12248 bp synthetic construct QT-EVE-ZM-024 109 bp View
HZ345403.1 emblrelpat JP 2015519051-A/9: CORN EVENT MON 8... 173 bp synthetic construct QT-EVE-ZM-024 109 bp View
HZ345404.1 emblrelpat JP 2015519051-A/10: CORN EVENT MON ... 338 bp synthetic construct QT-EVE-ZM-024 109 bp View
KH175016.1 emblrelpat Sequence 1 from patent US 9441240. 12248 bp unidentified QT-EVE-ZM-024 109 bp View
KH175024.1 emblrelpat Sequence 9 from patent US 9441240. 173 bp unidentified QT-EVE-ZM-024 109 bp View
KH175025.1 emblrelpat Sequence 10 from patent US 9441240. 338 bp unidentified QT-EVE-ZM-024 109 bp View
LP059333.1 emblrelpat Sequence 1 from Patent EP2846621. 12248 bp synthetic construct QT-EVE-ZM-024 109 bp View
LP059341.1 emblrelpat Sequence 9 from Patent EP2846621. 173 bp synthetic construct QT-EVE-ZM-024 109 bp View
LP059342.1 emblrelpat Sequence 10 from Patent EP2846621. 338 bp synthetic construct QT-EVE-ZM-024 109 bp View
MO052442.1 emblrelpat Sequence 1 from patent US 10316330. 12248 bp unidentified QT-EVE-ZM-024 109 bp View
MO052450.1 emblrelpat Sequence 9 from patent US 10316330. 173 bp unidentified QT-EVE-ZM-024 109 bp View
MO052451.1 emblrelpat Sequence 10 from patent US 10316330. 338 bp unidentified QT-EVE-ZM-024 109 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.