European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 18 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GM746204.1 emblrelpat Sequence 4 from Patent WO2008112019. 9425 bp synthetic construct QT-EVE-ZM-021 80 bp View
GM746212.1 emblrelpat Sequence 12 from Patent WO2008112019. 8114 bp synthetic construct QT-EVE-ZM-021 80 bp View
GM746248.1 emblrelpat Sequence 48 from Patent WO2008112019. 9423 bp synthetic construct QT-EVE-ZM-021 80 bp View
GM746250.1 emblrelpat Sequence 50 from Patent WO2008112019. 8112 bp synthetic construct QT-EVE-ZM-021 80 bp View
GY048850.1 emblrelpat Sequence 4 from patent US 7897846. 9425 bp unidentified QT-EVE-ZM-021 80 bp View
GY048858.1 emblrelpat Sequence 12 from patent US 7897846. 8114 bp unidentified QT-EVE-ZM-021 80 bp View
GY048894.1 emblrelpat Sequence 48 from patent US 7897846. 9423 bp unidentified QT-EVE-ZM-021 80 bp View
GY048896.1 emblrelpat Sequence 50 from patent US 7897846. 8112 bp unidentified QT-EVE-ZM-021 80 bp View
GY225151.1 emblrelpat Sequence 4 from patent US 7928296. 9425 bp unidentified QT-EVE-ZM-021 80 bp View
GY225159.1 emblrelpat Sequence 12 from patent US 7928296. 8114 bp unidentified QT-EVE-ZM-021 80 bp View
GY225195.1 emblrelpat Sequence 48 from patent US 7928296. 9423 bp unidentified QT-EVE-ZM-021 80 bp View
GY225197.1 emblrelpat Sequence 50 from patent US 7928296. 8112 bp unidentified QT-EVE-ZM-021 80 bp View
KP784700.1 nt Zea mays transgenic isolate 98140 a... 1841 bp Zea mays QT-EVE-ZM-021 80 bp View
KP784700.1 emblreltgn Zea mays transgenic isolate 98140 a... 1841 bp Zea mays QT-EVE-ZM-021 80 bp View
NRN_GM746204 nrnl1 Sequence 4 from Patent WO2008112019... 9425 bp unidentified QT-EVE-ZM-021 80 bp View
NRN_GM746212 nrnl1 Sequence 12 from Patent WO200811201... 8114 bp unidentified QT-EVE-ZM-021 80 bp View
NRN_GM746248 nrnl1 Sequence 48 from Patent WO200811201... 9423 bp unidentified QT-EVE-ZM-021 80 bp View
NRN_GM746250 nrnl1 Sequence 50 from Patent WO200811201... 8112 bp unidentified QT-EVE-ZM-021 80 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.