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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DI157741.1 emblrelpat Corn event MIR604. 1312 bp Zea mays QT-EVE-ZM-013 76 bp View
DI359069.1 emblrelpat KR 1020130025447-A/3: Corn Event MI... 1312 bp Zea mays QT-EVE-ZM-013 76 bp View
DI359130.1 emblrelpat KR 1020130023409-A/3: Corn Event MI... 1312 bp Zea mays QT-EVE-ZM-013 76 bp View
DJ437651.1 emblrelpat Corn Event MIR604. 1312 bp Zea mays QT-EVE-ZM-013 76 bp View
EA501315.1 emblrelpat Sequence 3 from patent US 7361813. 1312 bp unidentified QT-EVE-ZM-013 76 bp View
GY044804.1 emblrelpat Sequence 3 from patent US 7897748. 1312 bp unidentified QT-EVE-ZM-013 76 bp View
GZ734580.1 emblrelpat Sequence 3 from patent US 8354519. 1312 bp unidentified QT-EVE-ZM-013 76 bp View
HI999512.1 emblrelpat Sequence 3 from Patent EP2281447. 1312 bp Zea mays QT-EVE-ZM-013 76 bp View
HK205044.1 emblrelpat Sequence 3 from patent US 8884102. 1312 bp unidentified QT-EVE-ZM-013 76 bp View
JA201735.1 emblrelpat Sequence 3 from Patent EP2289311. 1312 bp Zea mays QT-EVE-ZM-013 76 bp View
LQ579566.1 emblrelpat Sequence 135 from Patent WO2016106121. 11632 bp synthetic construct QT-EVE-ZM-013 76 bp View
MI647878.1 emblrelpat Sequence 135 from patent US 9963710. 11632 bp unidentified QT-EVE-ZM-013 76 bp View
NRN_EA501315 nrnl1 Sequence 3 from patent US 7361813. ... 1312 bp unidentified QT-EVE-ZM-013 76 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.