Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 72 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
CS566034.1 emblrelpat Sequence 21 from Patent WO2006039376. 3594 bp synthetic construct QT-EVE-ZM-012 86 bp View
CS566036.1 emblrelpat Sequence 23 from Patent WO2006039376. 11922 bp synthetic construct QT-EVE-ZM-012 86 bp View
CS566045.1 emblrelpat Sequence 32 from Patent WO2006039376. 555 bp synthetic construct QT-EVE-ZM-012 86 bp View
CS566047.1 emblrelpat Sequence 34 from Patent WO2006039376. 243 bp synthetic construct QT-EVE-ZM-012 86 bp View
DL476421.1 emblrelpat CORN EVENT DAS-59122-7 AND METHODS ... 3594 bp synthetic construct QT-EVE-ZM-012 86 bp View
DL476423.1 emblrelpat CORN EVENT DAS-59122-7 AND METHODS ... 11922 bp synthetic construct QT-EVE-ZM-012 86 bp View
DL476432.1 emblrelpat CORN EVENT DAS-59122-7 AND METHODS ... 555 bp synthetic construct QT-EVE-ZM-012 86 bp View
DL476434.1 emblrelpat CORN EVENT DAS-59122-7 AND METHODS ... 243 bp synthetic construct QT-EVE-ZM-012 86 bp View
EA419701.1 emblrelpat Sequence 21 from patent US 7323556. 3594 bp unidentified QT-EVE-ZM-012 86 bp View
EA419703.1 emblrelpat Sequence 23 from patent US 7323556. 11922 bp unidentified QT-EVE-ZM-012 86 bp View
EA419712.1 emblrelpat Sequence 32 from patent US 7323556. 555 bp unidentified QT-EVE-ZM-012 86 bp View
EA419714.1 emblrelpat Sequence 34 from patent US 7323556. 243 bp unidentified QT-EVE-ZM-012 86 bp View
GX003486.1 emblrelpat Sequence 21 from patent US 7695914. 3594 bp unidentified QT-EVE-ZM-012 86 bp View
GX003488.1 emblrelpat Sequence 23 from patent US 7695914. 11922 bp unidentified QT-EVE-ZM-012 86 bp View
GX003497.1 emblrelpat Sequence 32 from patent US 7695914. 555 bp unidentified QT-EVE-ZM-012 86 bp View
GX003499.1 emblrelpat Sequence 34 from patent US 7695914. 243 bp unidentified QT-EVE-ZM-012 86 bp View
GX006371.1 emblrelpat Sequence 21 from patent US 7696341. 3594 bp unidentified QT-EVE-ZM-012 86 bp View
GX006373.1 emblrelpat Sequence 23 from patent US 7696341. 11922 bp unidentified QT-EVE-ZM-012 86 bp View
GX006382.1 emblrelpat Sequence 32 from patent US 7696341. 555 bp unidentified QT-EVE-ZM-012 86 bp View
GX006384.1 emblrelpat Sequence 34 from patent US 7696341. 243 bp unidentified QT-EVE-ZM-012 86 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.