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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 27 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
CQ945862.1 emblrelpat Sequence 24 from Patent WO2004099447. 11361 bp synthetic construct QT-EVE-ZM-010 58 bp View
CQ945865.1 emblrelpat Sequence 27 from Patent WO2004099447. 3347 bp synthetic construct QT-EVE-ZM-010 58 bp View
DD459037.1 emblrelpat Corn Event TC1507 and Methods for D... 11361 bp synthetic construct QT-EVE-ZM-010 58 bp View
DD459040.1 emblrelpat Corn Event TC1507 and Methods for D... 3347 bp synthetic construct QT-EVE-ZM-010 58 bp View
DI244975.1 emblrelpat KR 1020120107998-A/3: ENDPOINT TAQM... 11361 bp artificial sequences QT-EVE-ZM-010 58 bp View
EA359020.1 emblrelpat Sequence 24 from patent US 7288643. 11361 bp unidentified QT-EVE-ZM-010 58 bp View
EA359023.1 emblrelpat Sequence 27 from patent US 7288643. 3347 bp unidentified QT-EVE-ZM-010 58 bp View
GC560390.1 emblrelpat Sequence 24 from patent US 7417132. 11361 bp unidentified QT-EVE-ZM-010 58 bp View
GC560393.1 emblrelpat Sequence 27 from patent US 7417132. 3347 bp unidentified QT-EVE-ZM-010 58 bp View
GC659846.1 emblrelpat Sequence 24 from patent US 7435807. 11361 bp unidentified QT-EVE-ZM-010 58 bp View
GC659849.1 emblrelpat Sequence 27 from patent US 7435807. 3347 bp unidentified QT-EVE-ZM-010 58 bp View
GC673967.1 emblrelpat Sequence 24 from patent US 7449564. 11361 bp unidentified QT-EVE-ZM-010 58 bp View
GC673970.1 emblrelpat Sequence 27 from patent US 7449564. 3347 bp unidentified QT-EVE-ZM-010 58 bp View
GP324381.1 emblrelpat Sequence 24 from patent US 7514544. 11361 bp unidentified QT-EVE-ZM-010 58 bp View
GP324384.1 emblrelpat Sequence 27 from patent US 7514544. 3347 bp unidentified QT-EVE-ZM-010 58 bp View
GY311591.1 emblrelpat Sequence 24 from patent US 7989607. 11361 bp unidentified QT-EVE-ZM-010 58 bp View
GY311594.1 emblrelpat Sequence 27 from patent US 7989607. 3347 bp unidentified QT-EVE-ZM-010 58 bp View
HK233972.1 emblrelpat Sequence 24 from patent US 8901378. 11361 bp unidentified QT-EVE-ZM-010 58 bp View
HK233975.1 emblrelpat Sequence 27 from patent US 8901378. 3347 bp unidentified QT-EVE-ZM-010 58 bp View
HW254239.1 emblrelpat JP 2013514780-A/3: ENDPOINT TAQMAN ... 11361 bp synthetic construct QT-EVE-ZM-010 58 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.