European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 12 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GY508710.1 emblrelpat Sequence 3 from patent US 8049071. 6285 bp unidentified QT-EVE-GM-010 89 bp View
GY508713.1 emblrelpat Sequence 6 from patent US 8049071. 14416 bp unidentified QT-EVE-GM-010 89 bp View
HB386790.1 emblrelpat Sequence 3 from Patent WO2009064652. 6285 bp synthetic construct QT-EVE-GM-010 89 bp View
HB386793.1 emblrelpat Sequence 6 from Patent WO2009064652. 14416 bp synthetic construct QT-EVE-GM-010 89 bp View
HJ188110.1 emblrelpat Sequence 3 from patent US 8455198. 6285 bp unidentified QT-EVE-GM-010 89 bp View
HJ188113.1 emblrelpat Sequence 6 from patent US 8455198. 14416 bp unidentified QT-EVE-GM-010 89 bp View
JD009655.1 emblrelpat Sequence 6 from Patent WO2014170345. 6285 bp synthetic construct QT-EVE-GM-010 89 bp View
JD009658.1 emblrelpat Sequence 9 from Patent WO2014170345. 14416 bp synthetic construct QT-EVE-GM-010 89 bp View
JD011417.1 emblrelpat Sequence 6 from Patent WO2014170327. 6285 bp synthetic construct QT-EVE-GM-010 89 bp View
JD011420.1 emblrelpat Sequence 9 from Patent WO2014170327. 14416 bp synthetic construct QT-EVE-GM-010 89 bp View
NRN_GY508710 nrnl1 Sequence 3 from patent US 8049071. ... 6285 bp unidentified QT-EVE-GM-010 89 bp View
NRN_GY508713 nrnl1 Sequence 6 from patent US 8049071. ... 14416 bp unidentified QT-EVE-GM-010 89 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.