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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 17 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FB727428.1 emblrelpat Sequence 6 from Patent WO2008002872. 10849 bp synthetic construct QT-EVE-GM-009 99 bp View
FB727436.1 emblrelpat Sequence 14 from Patent WO2008002872. 8679 bp synthetic construct QT-EVE-GM-009 99 bp View
FB727463.1 emblrelpat Sequence 41 from Patent WO2008002872. 8679 bp synthetic construct QT-EVE-GM-009 99 bp View
GY216703.1 emblrelpat Sequence 6 from patent US 7951995. 10849 bp unidentified QT-EVE-GM-009 99 bp View
GY216711.1 emblrelpat Sequence 14 from patent US 7951995. 8679 bp unidentified QT-EVE-GM-009 99 bp View
GY216738.1 emblrelpat Sequence 41 from patent US 7951995. 8679 bp unidentified QT-EVE-GM-009 99 bp View
GY272893.1 emblrelpat Sequence 6 from patent US 7968770. 10849 bp unidentified QT-EVE-GM-009 99 bp View
GY272901.1 emblrelpat Sequence 14 from patent US 7968770. 8679 bp unidentified QT-EVE-GM-009 99 bp View
GY272928.1 emblrelpat Sequence 41 from patent US 7968770. 8679 bp unidentified QT-EVE-GM-009 99 bp View
GZ610691.1 emblrelpat Sequence 6 from patent US 8324457. 10849 bp unidentified QT-EVE-GM-009 99 bp View
GZ610699.1 emblrelpat Sequence 14 from patent US 8324457. 8679 bp unidentified QT-EVE-GM-009 99 bp View
GZ610726.1 emblrelpat Sequence 41 from patent US 8324457. 8679 bp unidentified QT-EVE-GM-009 99 bp View
JA627499.1 emblrelpat Sequence 6 from Patent EP2380987. 10849 bp synthetic construct QT-EVE-GM-009 99 bp View
JA627507.1 emblrelpat Sequence 14 from Patent EP2380987. 8679 bp synthetic construct QT-EVE-GM-009 99 bp View
JA627534.1 emblrelpat Sequence 41 from Patent EP2380987. 8679 bp synthetic construct QT-EVE-GM-009 99 bp View
NRN_FB727428 nrnl1 Sequence 6 from Patent WO2008002872... 10849 bp unidentified QT-EVE-GM-009 99 bp View
NRN_FB727436 nrnl1 Sequence 14 from Patent WO200800287... 8679 bp unidentified QT-EVE-GM-009 99 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.