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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 11 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
CS444252.1 emblrelpat Sequence 1 from Patent WO2006108675. 810 bp synthetic construct QT-EVE-GM-007 75 bp View
DI244158.1 emblrelpat KR 1020120107479-A/14: HERBICIDE TO... 810 bp artificial sequences QT-EVE-GM-007 75 bp View
DM079060.1 emblrelpat Elite event A5547-127 and methods a... 810 bp unidentified QT-EVE-GM-007 75 bp View
GY352207.1 emblrelpat Sequence 1 from patent US 8017756. 810 bp unidentified QT-EVE-GM-007 75 bp View
HK419703.1 emblrelpat Sequence 1 from patent US 8952142. 810 bp unidentified QT-EVE-GM-007 75 bp View
HK747737.1 emblrelpat Sequence 14 from patent US 9062324. 810 bp unidentified QT-EVE-GM-007 75 bp View
HW241803.1 emblrelpat JP 2013511294-A/14: Herbicide toler... 810 bp synthetic construct QT-EVE-GM-007 75 bp View
JB255996.1 emblrelpat Sequence 14 from Patent EP2503873. 810 bp synthetic construct QT-EVE-GM-007 75 bp View
KH839010.1 emblrelpat Sequence 14 from patent US 9683242. 810 bp unidentified QT-EVE-GM-007 75 bp View
LF938434.1 emblrelpat JP 2016187343-A/14: Herbicide toler... 810 bp synthetic construct QT-EVE-GM-007 75 bp View
NRN_CS444252 nrnl1 Sequence 1 from Patent WO2006108675... 810 bp unidentified QT-EVE-GM-007 75 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.